Based on the data of modern agricultural development level in Huaibei area, this paper made a comprehensive evaluation on the modern agricultural development of 6 cities in Huaibei area by Analytic Hierarchy Process (AHP). It analyzed the development trend and difference in the level of agricultural input, the level of agricultural output, the level of rural social development and the level of agricultural ecological security. The study shows that the overall level of modern agricultural development in Huaibei area is rising in the past 6 years, with the highest increase in Suzhou City, followed by Huainan City and Huaibei City, and the other cities ranking in the middle. In view of the problems in the process of modern agricultural development in Huaibei area, it came up with recommendations, including strengthening the land consolidation, transfer of agricultural population, improving the rural education and controlling the agricultural pollution.