The aim of the research was to analyse the functioning of agricultural farms located in the areas of Natura 2000 network. The research was conducted in 2015 among 70 farmers whose lands were located in the Valley of Biebrza River in Podlaskie Voivodeship. The main research method was a questionnaire. According to the results of the research, the agri-environmental scheme is a proper tool that combines the environmental protection and local producers’ interests; however, it requires the implementation of a supplement adjusted to the nature of the areas. It is also indicated that even though the economic part of the program does not raise any doubts, the natural eff ects are practically not recognized, which may lead to an incomplete protection of precious species and habitats.