The aim adopted in the paper was to review methods for assessing the organizational aspects of supply chains and to carry out their critical evaluation. The selected approaches of supply chains’ assessment, published in leading Journals dealing with logistics and supply chain management, were analyzed. Literature studies, interviews, analysis of processes in the chains were used for analysing of dependency between the individual stages of supply chain and identifying the integration of entire supply chain. An important issue was to determine the possibility of assessing the integration of supply chains in selected sectors of agribusiness by using approaches presented in the paper. Basing on the data from enterprises from a selected sector of food processing several approaches discussed in the paper were adopted to evaluate the configuration and organizational aspects of supply chains. These organizational aspects of supply chains were related to the efficiency of enterprises from a selected food processing sector.